PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG123000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 313aa    MW: 33463.7 Da    PI: 10.5782
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG123000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57346.11.4e-14116204397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +++lwse De++lL G   fk+++g  p   d+ +++e +++s+  +  +  +  K++rLK K+++ v         + s++h++ + +l
  Pavir.4NG123000.1.p 116 ISKLWSEADEVALLTGAAAFKDRNGIAPRLpDMPHLFEAIRGSLAPHLDHAKMYYKLKRLKSKYQHSVPG-------DSSTAHEHRVRDL 198
                          578***********************98877***********************************9998.......6788999999999 PP

               DUF573  92 skkiWg 97 
                          +  +Wg
  Pavir.4NG123000.1.p 199 CAALWG 204
                          999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-14117204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPSKQPSPHA MDEAAAAAAA SAGRLRPSTP RSKKRSSRSK SRARSRDRRR SPNPNPSSRR  60
ERAAEPGSAA PAPSRKSDRR PKPRYIPDSA TLATAMVSSA AAAGGGGAGR GSAGAISKLW  120
SEADEVALLT GAAAFKDRNG IAPRLPDMPH LFEAIRGSLA PHLDHAKMYY KLKRLKSKYQ  180
HSVPGDSSTA HEHRVRDLCA ALWGSELARP VQNDVVEAEE ADEEDAGGDG EGAGRLPMVR  240
EVLGEYWKSN GQGLSKVSLE KGLALLGSQE ASVAEGKWRR QLEADMRMQM RRHDLGKEVY  300
GLLIDAIKGL GP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.85130.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG123000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811058.11e-156transcription factor STKL2
TrEMBLA0A3L6S1X31e-154A0A3L6S1X3_PANMI; Uncharacterized protein
STRINGPavir.Da01938.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.15e-09DNA-binding storekeeper protein-related transcriptional regulator