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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG003500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 314aa MW: 34852.2 Da PI: 7.0574 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.1e-13 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Pavir.4NG003500.1.p 60 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-16 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.628 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-10 | 59 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 59 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-10 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.31E-8 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVSMSTTPHP LDSPTAPGKE EEARPMRLRQ AAAPMALPLG DDDDEGPRRV RKPYTITKSR 60 ESWTEPEHDK FLEALQLFDR DWKKIEAYVG SKTVIQIRSH AQKYFLKVQK NGTGEHLPPP 120 RPKRKAAHPY PHKASKKALQ VVLPQQTSHI MEQGCGTSID TATVATDLSA NDAFPSWEND 180 PVQHLSPRHT QGSGATNNYS SSIGSQSGTW PASEATEQDI MLPALRAMPD FARVYSFLGS 240 IFDPETNGHL QKLKEMDPID AETVLLLMKN LSINLTSPNF EEHRRLLSSH GSNMDQDTGS 300 SHTIHLPFMI TSK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6642 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG003500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812176.1 | 0.0 | protein REVEILLE 6-like isoform X2 | ||||
Swissprot | Q8H0W3 | 3e-91 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2T7E3Z8 | 0.0 | A0A2T7E3Z8_9POAL; Uncharacterized protein | ||||
STRING | Si006883m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 5e-79 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG003500.1.p |
Publications ? help Back to Top | |||
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