 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.4KG366200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
FAR1 |
| Protein Properties |
Length: 268aa MW: 30866.1 Da PI: 6.871 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4KG366200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 67.1 | 4.5e-21 | 25 | 113 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
f+ Y+ + GF+vrk+ +k+k +g++ ++vC +eg+r+e+k++ + ++ +raetrt+C+ ++ +++++ +g+++vt+l leHnH l+
Pavir.4KG366200.1.p 25 FWIIYGGQKGFEVRKRFANKRKSDGNVRFCRYVCANEGHRKEDKRD-HLTKCPRAETRTDCQVRMGLTMDQeKGTYKVTDLILEHNHMLQ 113
8899***************************************999.999*******************999***************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MEANREGLLP QVGMEFSSVQ EAWMFWIIYG GQKGFEVRKR FANKRKSDGN VRFCRYVCAN 60
EGHRKEDKRD HLTKCPRAET RTDCQVRMGL TMDQEKGTYK VTDLILEHNH MLQLPQTLHL 120
MVSQRKISEL QGFEIETADD AGIGPKAAHE LACVQVGGSS NLSYTLRDHK NYLRAKRQRE 180
MAYDQAGSML MYFQDKIAEN PSFQYALQMD IEEQIANIFW VDAKMLTDYA YFGDVVSFDT 240
TFGTNKESRP FGVFVGFNQF REIMNTL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB108421 | 0.0 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. |
| GenBank | AC077693 | 0.0 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
