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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG355300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 289aa MW: 30613.1 Da PI: 6.0962 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.7 | 4.7e-17 | 124 | 173 | 3 | 52 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L++eN +L k+l+e Pavir.4KG355300.1.p 124 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGENATLFKQLSEA 173 679*****************************************888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.7E-17 | 122 | 186 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-15 | 124 | 173 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.427 | 124 | 172 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-12 | 126 | 173 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.5E-14 | 126 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 129 | 144 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKKCPSELQL EAFIRESAGG AESKPGTGPS EPGGSAVFSP GGSAVFSPGG VGFGDSNTMD 60 GSSWWYGSIR PANPVVSQTA SVSAASPRAT TSANHALESE SDSDSESLYE VEGGSCERGT 120 KSMETKRIRR MVSNRESARR SRRRKQAQLS ELESQVEQLK GENATLFKQL SEANLQFTTA 180 VTDNRILKSD VEALRVKVKM AEDMVARSAM SCGLGDLGLA PYLNSRKMGQ ALNMLTATGL 240 DLLGSEAFRG PTAARQVQNS PVQSTASLES LDNRKSSEVT SCAADMWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 145 | RRSRRRKQ |
2 | 140 | 145 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14580 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds at low levels from 5 to 20 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG355300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965642.1 | 1e-166 | bZIP transcription factor RISBZ5 | ||||
Swissprot | Q654B3 | 1e-103 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | K3XYN5 | 1e-165 | K3XYN5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Da00268.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2095 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 3e-28 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG355300.1.p |
Publications ? help Back to Top | |||
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