PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG346800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 692aa    MW: 74973.8 Da    PI: 6.5095
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG346800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.31.3e-26172225155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W+ +LH++Fvea++++ G+++A+Pk+ilelm+v+gL++++v+SHLQkYR+
  Pavir.4KG346800.1.p 172 RQRIKWSGQLHRKFVEAINNI-GIDRAVPKKILELMNVDGLSRHNVASHLQKYRI 225
                          58*******************.********************************7 PP
2Response_reg74.25e-25121241109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                          vl vdD+++ + +l++ l+  +y+  ++++++e ale+l+e++     +D+++ D+ mpg+dG++ll+ i  e  ++p+i+++a++e+e+
  Pavir.4KG346800.1.p  12 VLAVDDDRTGLLILKRQLQLCNYNCMTTVTEAETALEMLRERKnrddqFDVVISDVFMPGIDGFKLLELIGLEM-DIPVIMLSANDEMET 100
                          799****************99996666999999999999777777899**********************6644.8************** PP

                          HHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                          + + +  Ga d+l+Kp ++e+l++
  Pavir.4KG346800.1.p 101 IMKGIMHGACDYLVKPASIEQLRN 124
                          *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.9E-369145No hitNo description
SuperFamilySSF521722.56E-329146IPR011006CheY-like superfamily
SMARTSM004487.9E-2610126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.86411130IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2112124IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.45E-2513123No hitNo description
PROSITE profilePS512949.847169228IPR017930Myb domain
SuperFamilySSF466891.45E-18169229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26170230IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23173225IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MDANKFPAGL RVLAVDDDRT GLLILKRQLQ LCNYNCMTTV TEAETALEML RERKNRDDQF  60
DVVISDVFMP GIDGFKLLEL IGLEMDIPVI MLSANDEMET IMKGIMHGAC DYLVKPASIE  120
QLRNIWTHVV KKNRSDPRNN ISDGNTRNHF KKNKKDGGCA EEDIVGTSTQ KRQRIKWSGQ  180
LHRKFVEAIN NIGIDRAVPK KILELMNVDG LSRHNVASHL QKYRIYLRKL SEGTLSHSNP  240
FIDEPQAWIS DQTPIRMNAP ESSEHHPELV HPSPSSVGAS NSSNGRMSYP STFGTQNLQQ  300
ELVQVGNGVN LHKDVMPVPL PVPVQDVGRF IYSGRHYATG SSDNLSSSSQ CFPSGPSSSS  360
STNISNGVVF STSMPFPSGT FGSSFASISN EYSPSATTMC FPSSRSCSSY ASILRGKILE  420
ANRGISFDAN SFFEEIANGD MPASSSQLPS QHAELANQPS AHIQSSSAGQ FNQVAPSSHL  480
PLHSPEFANQ TLIQIQTSSV GLSNQVDRES HQFSGLYNPT NSSRVSVPTM FPDIGHSARM  540
PISSSHGNHV RINQLPTSVA SSECVPTFES QYQNQMSGLL RRTTPTLGFS EQVAPFNLGS  600
SAMPIGSSAL GSSSSVGPAL ANLQIGNSVT PTQMPRGGAA IGNLPGGGTV DQQSVGDQVN  660
NSNVLPKRTS EVQDGEIDDV SIFFADWVNQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21168231164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG346800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A368QW950.0A0A368QW95_SETIT; Uncharacterized protein
TrEMBLK3Y2T20.0K3Y2T2_SETIT; Uncharacterized protein
STRINGPavir.J35198.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-75response regulator 10