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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.4KG333800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 310aa MW: 32606.6 Da PI: 8.7139 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4KG333800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw +
Pavir.4KG333800.1.p 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
89******************************.***********985 PP
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2 | Myb_DNA-binding | 55.1 | 1.7e-17 | 63 | 105 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
r ++T+eEd +v+a+++lG++ W++Iar ++ gRt++ +k++w+
Pavir.4KG333800.1.p 63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
679*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MGAVAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAAAAAAGG 120 AGSDGAELEA RPSKRQSLSP DTPSSGSGTV SDRSDLSHGA GSGSGQVFRP VPRSGGFEPA 180 DCAMSRPAED DDPLTSLSLS LPGTDQRFHH DRAHSQFQEL PASPPPPSPS PPPPPPAPSA 240 PAAAAYPFSP DFMAAMQELI RAEVQRYMAG AGVRAGCGPA GGAGLCMPQL VEGIMRAAAE 300 RVGAVARIK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679429 | 1e-163 | HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein. |