PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG329900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 187aa    MW: 19059.9 Da    PI: 11.2398
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG329900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.72.9e-0985133553
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                          +r+rr ++NRe+Arr R+R++ +++ L  +v+eL a N +L+ el++  
  Pavir.4KG329900.1.p  85 RRARRQASNRESARRARARRRGQLDVLSARVAELRAANARLAVELNRVA 133
                          79*******************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.00280159IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-781131No hitNo description
PROSITE profilePS5021710.32383132IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.97E-585131No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQRDIGTLAR HPLGAAEFSS FYLLQHGSGS GGAAGGGASG PWWSYSCHGG GSGAISAGAG  60
AGAGELELPA AGAGAGAAAA RDDERRARRQ ASNRESARRA RARRRGQLDV LSARVAELRA  120
ANARLAVELN RVAAARARAA REGARLREEA RALRERLDAA EAHAQRPAAT EKEAGDEEAG  180
TPTGTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG329900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967159.25e-33bZIP transcription factor 44-like
TrEMBLA0A2T7DWA14e-49A0A2T7DWA1_9POAL; Uncharacterized protein
TrEMBLA0A2T8JC574e-49A0A2T8JC57_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17736811