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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.4KG320600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 511aa MW: 56419.5 Da PI: 4.3503 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.4KG320600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed++l+d+v+ +G g+W+ + r g++R++k+c++rw ++l
Pavir.4KG320600.1.p 66 KGPWTPQEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 113
79******************************************9986 PP
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2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 119 | 162 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++
Pavir.4KG320600.1.p 119 KGPFDAEEVDKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 162
799*******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MTVVKVEPEP ALELASVAVA EARAEELSPP LSYGEDEEEE DDDEEEDDEE TDSEGYGGGG 60 APPLKKGPWT PQEDKRLKDY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA NHLRPDLKKG 120 PFDAEEVDKI IKFHIMWGNK WAKMASHLPG RTDNEIKNYW NTRLKRHQRA GLPIYPEYLL 180 SRVPDQDMNC HTPDESRGKK RSNELPQEKV VGMDDLVGDF MVFQHLDYGK DPVVPANPLK 240 RHASTGDLSC VQIPANIEKT FYSNDLNYVL TKSQSMPLGS AIANGYPTFD GNLSTSGTIH 300 GSMKTELPSF QCSKYDFSNG WLLQCPSASI EQQIDTFIQS PESMSSHNNG MLGTIINNGD 360 VLDDPTKSGR VFEMPVPLGC NIISQSNDYP MWHPSSSVNG DCEPDACLFT EIQDSNSPSG 420 GSDAIFTLGK SYPDAIFSVA GMPGTSLEAS FLNDDSLLLK DQSYFYPSGS FFDEDSCEER 480 KPLIDAGQWF DSSAWKSVPG ACNTPDFPGP *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679439 | 1e-107 | HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein. |