PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG310700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 647aa    MW: 70502.9 Da    PI: 5.3849
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG310700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.61e-26193246155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pavir.4KG310700.3.p 193 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 246
                          58*******************.********************************6 PP
2Response_reg74.54.1e-25121211108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                          vl vdD+++ +++l++ l++ +y +v+ ++d++ al++l+e++    ++l++ D+ mp++dG++ll+ i  e  ++p+i+++a++e e++
  Pavir.4KG310700.3.p  12 VLAVDDDRVSLMILEKQLKHCNY-NVTMVTDAKTALDMLRERKdvdqFELVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETV 99 
                          799********************.***************99988999**********************6644.8*************** PP

                          HHHHHTTESEEEESS--HHHHH CS
         Response_reg  87 lealkaGakdflsKpfdpeelv 108
                           + ++ Ga d+l+Kp+  e+l+
  Pavir.4KG310700.3.p 100 MKGINHGACDYLVKPVRLEQLR 121
                          *******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.1E-1322646IPR017053Response regulator B-type, plant
SuperFamilySSF521721.2E-339130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-389165No hitNo description
SMARTSM004484.3E-2810124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.08811128IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2212121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.36E-2713121No hitNo description
PROSITE profilePS5129411.51190249IPR017930Myb domain
SuperFamilySSF466891.0E-18190250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-27191250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23194246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDAGKFPAGM RVLAVDDDRV SLMILEKQLK HCNYNVTMVT DAKTALDMLR ERKDVDQFEL  60
VISDVVMPDI DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVRLEQL  120
RGIWTHVVRN SKCDPRNSIS GGNDDSGKKI QSGDGDKGEK DGENHARKYS KKKKKDIDCA  180
GEDKENASST QKRQRVQWPG ELHRKFVEAV NQIGMDRAVP KKILEVMNVD SLTRENVASH  240
LQKYRIFLRK LSEGKLNKSS PFADGHRAWC SDWVAESSEH HPELGRYQSV PSFVASPSSS  300
NPFARMNSPS ALAHTFLPTQ SVQLVSSQRN ACIPQRDMEL VGHGVNLSGA SQCFPSNPSS  360
SFANIPNGVS LASSKRFPLP RSCSSYASIL RGKILGANRG IPFDDTADGE ILAPSIHLPL  420
QSPELVNQLP DQIQSSFAGL FNQVAREAHQ FAGHSNSWKA AVASRFPDLS HNVEMPKDPS  480
QGNIDKINQL SRLTASSGQI SIFENLYQNQ IAGIIGKTAP ALSFNEQVAP FNFGSSTLDT  540
SMPIGNSDLG SSSSTRPSLP NLQIDDSVMP AQILNGEDAS GNHPEGGTIN QQTVGNQVIS  600
NNEFLVGTSE VQNGASSGDL DDFFADMVDE DFINNGDAFL GGDWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22189252164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG310700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812922.10.0two-component response regulator ORR24-like isoform X2
TrEMBLA0A2T7DWJ50.0A0A2T7DWJ5_9POAL; Two-component response regulator
STRINGPavir.J10177.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-81response regulator 12