PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG310700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 719aa    MW: 78598.3 Da    PI: 6.2787
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG310700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.41.2e-26264317155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r++W  eLH++Fveav+q+ G ++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pavir.4KG310700.1.p 264 RQRVQWPGELHRKFVEAVNQI-GMDRAVPKKILEVMNVDSLTRENVASHLQKYRI 317
                          58*******************.********************************6 PP
2Response_reg74.34.8e-25831921108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                          vl vdD+++ +++l++ l++ +y +v+ ++d++ al++l+e++    ++l++ D+ mp++dG++ll+ i  e  ++p+i+++a++e e++
  Pavir.4KG310700.1.p  83 VLAVDDDRVSLMILEKQLKHCNY-NVTMVTDAKTALDMLRERKdvdqFELVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETV 170
                          799********************.***************99988999**********************6644.8*************** PP

                          HHHHHTTESEEEESS--HHHHH CS
         Response_reg  87 lealkaGakdflsKpfdpeelv 108
                           + ++ Ga d+l+Kp+  e+l+
  Pavir.4KG310700.1.p 171 MKGINHGACDYLVKPVRLEQLR 192
                          *******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.7E-13265718IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-3880236No hitNo description
SuperFamilySSF521721.42E-3380201IPR011006CheY-like superfamily
SMARTSM004484.3E-2881195IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.08882199IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2283192IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.87E-2784192No hitNo description
SuperFamilySSF466891.15E-18261321IPR009057Homeodomain-like
PROSITE profilePS5129411.51261320IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-27262321IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23265317IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MSGESRTRMN TFHLCSLRYS DPRSSPSPPP PRYKSPFPSL RRASPRIRLA LSSASLLLLR  60
EVLCREAIAA EMDAGKFPAG MRVLAVDDDR VSLMILEKQL KHCNYNVTMV TDAKTALDML  120
RERKDVDQFE LVISDVVMPD IDGFKLLELI GLEMDIPVIM LSANDETETV MKGINHGACD  180
YLVKPVRLEQ LRGIWTHVVR NSKCDPRNSI SGGNDDSGKK IQSGDGDKGE KDGENHARKY  240
SKKKKKDIDC AGEDKENASS TQKRQRVQWP GELHRKFVEA VNQIGMDRAV PKKILEVMNV  300
DSLTRENVAS HLQKYRIFLR KLSEGKLNKS SPFADGHRAW CSDWVAESSE HHPELGRYQS  360
VPSFVASPSS SNPFARMNSP SALAHTFLPT QSVQLVSSQR NACIPQRDME LVGHGVNLSG  420
ASQCFPSNPS SSFANIPNGV SLASSKRFPL PRSCSSYASI LRGKILGANR GIPFDDTADG  480
EILAPSIHLP LQSPELVNQL PDQIQSSFAG LFNQVAREAH QFAGHSNSWK AAVASRFPDL  540
SHNVEMPKDP SQGNIDKINQ LSRLTASSGQ ISIFENLYQN QIAGIIGKTA PALSFNEQVA  600
PFNFGSSTLD TSMPIGNSDL GSSSSTRPSL PNLQIDDSVM PAQILNGEDA SGNHPEGGTI  660
NQQTVGNQVI SNNEFLVGTS EVQNGASSGD LDDFFADMVD EQDFINNGDA FLGGDWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-22260323164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG310700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812920.10.0two-component response regulator ORR25-like isoform X1
TrEMBLA0A2S3HI730.0A0A2S3HI73_9POAL; Uncharacterized protein
STRINGPavir.J10177.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.19e-81response regulator 12