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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.4KG309000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C2H2 |
| Protein Properties |
Length: 416aa MW: 44340 Da PI: 7.6851 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4KG309000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 2.9e-05 | 192 | 211 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Pavir.4KG309000.1.p 192 FSCPVCYKTFNRYNNMQMHM 211
89*****************9 PP
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| 2 | zf-C2H2 | 11.7 | 0.00077 | 276 | 298 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +C+k F + + ++H +++
Pavir.4KG309000.1.p 276 FMCRKCSKAFAVRGDWRTHEKNC 298
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MGDPYTNFLR GYYSSHFPPS NPPSFPTSGS YASSYLHPPP PSPPIREALP LLSTLTPSSS 60
SAATNHQQHH DDVAARDHKA ACRRAASCSG QDDTADQASG EVTVALHIGL PSPGPSESAA 120
GGSESREPAA EGSSSLQQPG DGHEGGGDEE DGDDAEDAAM AVGCASIGIG RLTKGQYWIP 180
TPSQILIGPT QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC 240
CAAGCRNHID HPRARPLKDF RTLQTHYRRK HGIKPFMCRK CSKAFAVRGD WRTHEKNCGK 300
FWYCACGSDF KHKRSLKDHI RAFGRGHAAC GIDCFDDGLD DDDGDGRDDR DPSISSEVID 360
HAAGGGGTAA AANRSNTAAS AAATATGAAS SSYRHRHWKP PPPPPPPSRG SGGLL*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT038915 | 0.0 | BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds. |
