PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG306300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 421aa MW: 44123.9 Da PI: 7.4749 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 297.6 | 3.2e-91 | 41 | 420 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++l+l+ A+ ++ gdl +a+++ l asp++d+ Rla +f++ALa r + ++ a + + aa+ +f+++ P+l Pavir.4KG306300.4.p 41 RDLVLASADLLQRGDLPAARRAAGVLLSAASPRADAADRLAYHFARALALRADAAGRVVAPAGLVP----AARPASSAAYLAFNQIAPFL 126 6789999*********************************************99555444443333....335677788999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +f+hltaNqaIl+aveg++rvHi+D+d+ +G+QWp+Llqa+a+R+ +gpp++RiTg g+ ++++l +tg+rL+ fA+++++pf+f Pavir.4KG306300.4.p 127 RFAHLTANQAILDAVEGARRVHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPFHF 212 ********************************************988888***********....9************************ PP GRAS 179 nvl...............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.. 251 ++l +++ ++ + +L+++p+E+laVn+++ lh+l + ++e ++Lk vk + P vv+++e+e+ ++ Pavir.4KG306300.4.p 213 TPLllssaatqhqpvaggSTTTASSEATTSLDLHPDETLAVNCIMFLHKLG---G--QDEVAAFLKWVKAMAPAVVTIAERETVGGGYdr 297 ***998888888876665445566668999********************8...2..233578*******************65544334 PP GRAS 252 ..sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ++ +r + a+++ysa+f++lea++p+ s+er vE+e+lgrei+ ++ +g + + le+W ++ ++aGF + pls +a++qa+l Pavir.4KG306300.4.p 298 idDLPQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAALGPAGGR---WWRGLERWGAAARAAGFAARPLSAFAVSQARL 384 459***********************************************99987...7899**************************** PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 llr ++ s+gy ++e +g+ +lgW++rpL+svS+W+ Pavir.4KG306300.4.p 385 LLRLHYpSEGYLLQEARGACFLGWQTRPLLSVSSWQ 420 ***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.853 | 14 | 399 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-88 | 41 | 420 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MLGSLHHHSS SSSDTDNNND NKSSGGGGGG VLAAAAAPSA RDLVLASADL LQRGDLPAAR 60 RAAGVLLSAA SPRADAADRL AYHFARALAL RADAAGRVVA PAGLVPAARP ASSAAYLAFN 120 QIAPFLRFAH LTANQAILDA VEGARRVHIL DLDAAHGVQW PPLLQAIAER ADPAAGPPEV 180 RITGAGADRD TLLRTGSRLR AFARSIQLPF HFTPLLLSSA ATQHQPVAGG STTTASSEAT 240 TSLDLHPDET LAVNCIMFLH KLGGQDEVAA FLKWVKAMAP AVVTIAERET VGGGYDRIDD 300 LPQRAAVAMD HYSAVFEALE ATVPPGSRER LAVEQEVLGR EIEAALGPAG GRWWRGLERW 360 GAAARAAGFA ARPLSAFAVS QARLLLRLHY PSEGYLLQEA RGACFLGWQT RPLLSVSSWQ 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-50 | 68 | 420 | 31 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG306300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP876558 | 0.0 | KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810768.1 | 0.0 | protein MONOCULM 1-like | ||||
Refseq | XP_025810769.1 | 0.0 | protein MONOCULM 1-like | ||||
Swissprot | Q84MM9 | 0.0 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A3L6PE74 | 0.0 | A0A3L6PE74_PANMI; Protein MONOCULM 1-like | ||||
STRING | Si008068m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-72 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG306300.4.p |