PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG231300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 547aa    MW: 57711.5 Da    PI: 4.3188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG231300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.3e-25254311359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D + WrKYGqK +kgs++ rsYY+C++  +C+++k ver+++d +++++ Y+geH+h+
  Pavir.4KG231300.1.p 254 DTWMWRKYGQKGIKGSPHVRSYYKCSTDkQCTARKYVERCRDDSRYLVVSYTGEHTHD 311
                          99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26246313IPR003657WRKY domain
SuperFamilySSF1182906.54E-23250313IPR003657WRKY domain
SMARTSM007742.0E-28252312IPR003657WRKY domain
PfamPF031061.3E-20254311IPR003657WRKY domain
PROSITE profilePS5081127.933254313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDDDGMGGFG DGRNSDRSNW DLHDFLHFAC GDALAPPPPT DDDDDDPFAV YPPLAPLAPP  60
PPTNDDDPFA VYPPLPPPAL PAFDPLASFL QPQLHYGIPD DMEWQQMAPD QLPATDPAAV  120
VVVSPGQGIS AAPPQPPQPD LPDSAECDLD LLLQDEGPID VDALSDDDCC MVISPVSSVQ  180
AHVAPPQPPS PPRTQAPAPS VLQPPAANPP SPDMTGPSSD GAGPSRPRRR YSTKKDRRTV  240
TRSWDLNDGA PPPDTWMWRK YGQKGIKGSP HVRSYYKCST DKQCTARKYV ERCRDDSRYL  300
VVSYTGEHTH DTPLNRSVAV TRNNDSGVVN PPLPPPPVVP NITAVAQAAE APAPPPSVTP  360
ASLSPTAPPP APPSPFPRIP AAVKGKQKAP APLPALPAAS LSRILKTLVE ESRKAPAPPA  420
IAASASLSPT TPLRLPSAGL ELDVEDYRDA SAVTMMIVDA DKPQDGGGLP LPMPEELAPV  480
HHGAPGGGSN YNMMFPASYD ETTAAGSSSS GDGSIRTAAP VPAPIGNLVD DTFCQQEPWG  540
SFWYWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-132543131674WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG231300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Da01715.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2773445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-22WRKY DNA-binding protein 65