PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG180800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 241aa    MW: 24435.1 Da    PI: 4.5233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG180800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162674355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  Pavir.4KG180800.1.p 26 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 74
                         9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.3E-282590IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-162585IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-262584IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662584IPR001471AP2/ERF domain
CDDcd000189.44E-142684No hitNo description
PRINTSPR003673.1E-82637IPR001471AP2/ERF domain
PfamPF008473.6E-102674IPR001471AP2/ERF domain
PRINTSPR003673.1E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVKTAAASND TAAAAAVAKR SAKRTYKGVR MRSWGSWVSE VRAPGQKTRI WLGSHSTAEA  60
AARAYDAALL CLKGSAAAAD LNFPLRLPFD LPPAAMSPKA IQRAAAAAAA AAAAAGGGAG  120
FAACAADNAD SACSGTTAAS PAWSGGSPSR SDDASAVSSP ESTVSSESEL PAAHHYGDAD  180
ADYYSSLADI DAFFQSPKCM EYAMMDPCSA FFAPAPVAAD DACWEEEGDI ALWSFSTLDC  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG180800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046879e-83AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149629e-83AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126149e-83CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810729.11e-116ethylene-responsive transcription factor ERF014-like
RefseqXP_025810730.11e-116ethylene-responsive transcription factor ERF014-like
RefseqXP_025810731.11e-116ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2S3HKS71e-114A0A2S3HKS7_9POAL; Uncharacterized protein
TrEMBLA0A2T7E1G31e-114A0A2T7E1G3_9POAL; Uncharacterized protein
STRINGSi007977m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.14e-22ERF family protein