PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG152700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 176aa    MW: 18345.4 Da    PI: 11.0319
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG152700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.74e-31221681128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya.......tgkrknr.atk 79 
                          lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p+  +++a+e e yfF+ r             g    r at+
  Pavir.4KG152700.3.p  22 LPPGFRFRPTDEELVVQYLRRKALGVPLPA-AVIPVVrDLYSLDPWDIPAaaAADASEGEKYFFAVRPAGVGgsgcsgkLG-GGARaATA 109
                          79****************************.8899999***********522444455599*****999877544433222.3444489* PP

                  NAM  80 sgyWkatgkdkevlsk.....kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                          sg+Wk +gk+k+v+       ++ lvg+k+ ++f      k+ ++ +  + Wvmheyrl
  Pavir.4KG152700.3.p 110 SGRWKPSGKEKPVVLPrpcggGSLLVGVKRAMTFAprrnkKKASSAALAAGWVMHEYRL 168
                          **************99899877777**********7654222333344789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3617173IPR003441NAC domain
PROSITE profilePS5100537.42122175IPR003441NAC domain
PfamPF023651.2E-2023168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAVAALR QLPPGFRFRP TDEELVVQYL RRKALGVPLP AAVIPVVRDL  60
YSLDPWDIPA AAAADASEGE KYFFAVRPAG VGGSGCSGKL GGGARAATAS GRWKPSGKEK  120
PVVLPRPCGG GSLLVGVKRA MTFAPRRNKK KASSAALAAG WVMHEYRLAA PLHKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-232116814140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39610.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG152700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.11e-92NAC domain-containing protein 18-like isoform X1
TrEMBLA0A3L6RHL27e-92A0A3L6RHL2_PANMI; NAC domain-containing protein 18-like
STRINGPavir.J04931.1.p1e-121(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-25NAC domain containing protein 41