PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG151800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 37207.7 Da PI: 6.4214 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 238 | 275 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L Pavir.4KG151800.1.p 238 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 275 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.036 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-12 | 236 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.74E-6 | 236 | 280 | No hit | No description |
SMART | SM00353 | 0.0055 | 237 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 240 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MADEWWSSAR TGDDGGASAC STVRATDQDA AEPPATSATE TDYFRPSLLH VGAAAAAASP 60 PPSFLADPAP HMVDWTQAYM GGSGRAAGAE ATNSFNALLQ LHGDDAGRHF LLDQQPDVVD 120 GVAPVEPAAA ASRSAPLYVD KQYSSYGDVP ATPMMTKPFS QQQQQHISGF FGSSMRTFSD 180 MPSAPPMTRT KPLLLQALEH KAFESNDEPV QDTCSLATTR SKKPRIATPS PLPTFKVRKE 240 KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIRFLHNQVA SLSSPYLRCG RPVQQLQQQQ 300 IKEGREAKDL RSRGLCLVPV ASTYAVAASE TAPEFWHPTF GGTFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG151800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT069546 | 1e-79 | BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806482.1 | 0.0 | transcription factor bHLH112-like isoform X2 | ||||
TrEMBL | A0A2S3HAQ5 | 0.0 | A0A2S3HAQ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J10443.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.3 | 1e-45 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG151800.1.p |