PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG144400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 690aa    MW: 80343.4 Da    PI: 6.7173
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG144400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.45.7e-2426118191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YA   GFsvrks+ + +++++eit r++vCs +g++ee+  k + k+rr+   tr+gC+ kl++ +++ +g+w+v+++  eHnH+
  Pavir.4KG144400.1.p  26 QFYNAYALGKGFSVRKSYVEWNRDHTEITLRRYVCSHQGYHEEKYVKkEIKKRRPWDITRVGCRTKLVIALDRnSGQWYVKNFIDEHNHP 115
                          6***************************************99987663678889999**************999**************** PP

                 FAR1  89 lap 91 
                          lap
  Pavir.4KG144400.1.p 116 LAP 118
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2226118IPR004330FAR1 DNA binding domain
PfamPF105515.8E-32239332IPR018289MULE transposase domain
PROSITE profilePS5096610.101515555IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MADLENLMEY SEIISKMFAD EDEGHQFYNA YALGKGFSVR KSYVEWNRDH TEITLRRYVC  60
SHQGYHEEKY VKKEIKKRRP WDITRVGCRT KLVIALDRNS GQWYVKNFID EHNHPLAPAD  120
LGYLLRSHRS ISDAQKAEIV ELGVAGIRKH HIFEIMEMQY GRYDKIGYTS RDLYNFCHLY  180
KQEIIAAGDA QTIISHLMER QNRDSDFFFK YMTNGEGHLE GLFWCDTQCL LDYEAFGDVV  240
FDSTYKTNWY NLPLVPFVGV NHHYRTVIFG CGIISHENIE SYVWLLKIFT ETNVQKHPIS  300
VITDGDLAMQ RAISVVWPNS PHRFCGWHIE QNLVRNIHDD TVKAEFRIFM YDLCSIEEIE  360
RKWQAFFEKY DITEDSWLYQ MYEVRATWCA VYHAGNCYLG LRSNQRSESM NSRLQMKLDG  420
KITLLEMVQH YESCLTKVRR IEVDDDANAL QSEPFTDPDA SILEVNAKKR FTPNVFKTKV  480
QFNMEAAKKC SLVEILDGDD TTEYIVGRSD RDMMYYVKCE LTEEANLKEI SCSCRKLQSL  540
GTPCSHIFFV LDIRDESMLP DCCVLVRWTM GAKRAFPPIR KSTMYDYSPT LLRYRELRNL  600
SLAASFATPR STEGYEHIKR VLEQEAAVIM PNAPEVDCEE FRDVLDPMHV PGRGAPKKNL  660
KSSSDKTRAD SKCSLCNGHG HNRRTCHLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG144400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A453MVG20.0A0A453MVG2_AEGTS; Uncharacterized protein
TrEMBLA0A453MVW80.0A0A453MVW8_AEGTS; Uncharacterized protein
STRINGPavir.J35643.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-86FAR1-related sequence 5