PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG136000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 438aa    MW: 46824.9 Da    PI: 6.4176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG136000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05131152223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp Cgk F+++ ++  H+r+H
  Pavir.4KG136000.1.p 131 ECPECGKFFKNHKSMFGHLRSH 152
                          6********************9 PP
2zf-C2H212.90.00032308330123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++C+  Fs++  L  H+  H
  Pavir.4KG136000.1.p 308 YVCKHCKAEFSTPQALGGHMAGH 330
                          9*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.284130157IPR007087Zinc finger, C2H2
SMARTSM003550.0048130152IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.22E-9131152No hitNo description
PfamPF139120.0027131152IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-9303330No hitNo description
Gene3DG3DSA:3.30.160.602.2E-4304334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.034308331IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-8308332IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889308335IPR007087Zinc finger, C2H2
PROSITE patternPS000280310331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSKGSLLWLC SLVLLQVCIA QLSLISGSQL TGGQIGSNHL CQDPIRRAWL MSSHGHDASD  60
DDGHSADVIS DEELADEGVD TSDEYTSEDR GVPVAVGQDG AEEEEGLLPS DGNDDGGDDT  120
KDSSGSGGDV ECPECGKFFK NHKSMFGHLR SHPNRGYKGA TPPVKKLKLS PEAAAASSSS  180
SSQGIERPPA QHSGRDPQLT SLEMLCAYGI LAIKYRDNKQ ATQVPLPPPS FGKLDAIGQA  240
EGGIRGSATG YAAAKIKGNN AGNVGNYDEH SGSFEKIPKN RRNITKEVSE AHRKKAKLVP  300
TLKEKRPYVC KHCKAEFSTP QALGGHMAGH HREKKVPAHQ ISMAAESQNA KRQVGGGDED  360
DNRCRGNDLS PPGLLSEQFS MVVDMPWQHG QASGGQMRQH SERNDGLSAA PTRHLTDDAV  420
GRRLFNIDLN VKAPEQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG136000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.10.0uncharacterized protein LOC112890871
TrEMBLA0A2T7DZS00.0A0A2T7DZS0_9POAL; Uncharacterized protein
STRINGPavir.Da01512.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-06C2H2 family protein