PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG122000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 246aa MW: 26541 Da PI: 9.1367 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 154.4 | 2e-48 | 43 | 136 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 reqdr+lP+anvsrim+++lP +akis+dake++q+cvsefisfvt+ea+++c+ e+rkt++++dl+wa+ lGf+dyv pl+++l++ r Pavir.4KG122000.1.p 43 REQDRLLPVANVSRIMRHALPPHAKISDDAKEMIQDCVSEFISFVTGEANERCHTEHRKTVTAEDLVWAMNRLGFDDYVRPLNAFLQRMR 132 89**************************************************************************************** PP NF-YB 92 eleg 95 e+eg Pavir.4KG122000.1.p 133 EIEG 136 **98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.6E-45 | 39 | 144 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.43E-35 | 45 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.0E-25 | 48 | 112 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-13 | 76 | 94 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 79 | 95 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-13 | 95 | 113 | No hit | No description |
PRINTS | PR00615 | 1.3E-13 | 114 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MSTDPQGPKP RAPCAMPPEH AAVAKEAMVT EPLVPSTEPV MIREQDRLLP VANVSRIMRH 60 ALPPHAKISD DAKEMIQDCV SEFISFVTGE ANERCHTEHR KTVTAEDLVW AMNRLGFDDY 120 VRPLNAFLQR MREIEGGGSG RGSRRGSSLV ALQGAQTLRP AYPDAPQGYA VRPVPRPVPV 180 PASSVASRFG SRHLQLPGGQ RSMVPYYGGA AAFRAVGSHG GFYADEASSS DEAPPAARRA 240 GSRRY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-46 | 42 | 133 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG122000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT060974 | 1e-102 | BT060974.1 Zea mays full-length cDNA clone ZM_BFb0079C17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813135.1 | 1e-111 | nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A2S3HJP8 | 1e-123 | A0A2S3HJP8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00342.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-47 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG122000.1.p |