PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG121900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 134aa MW: 14692.5 Da PI: 6.9327 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 101.6 | 5.9e-32 | 23 | 115 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++ +P a v+rim++ P n+ i+ dake v++c +ef + + + a + c+++kr t++gddl+ ala+lGfedyv pl +yl++yre+e Pavir.4KG121900.1.p 23 EHRIPRATVARIMRHGSPPNSTITGDAKEAVDNCLVEFCAVLIAAAVEECRQDKRTTVTGDDLILALANLGFEDYVRPLALYLRRYREIE 112 6779************************************************************************************** PP NF-YB 95 gek 97 g++ Pavir.4KG121900.1.p 113 GNR 115 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.04E-26 | 22 | 119 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.4E-29 | 22 | 122 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-15 | 25 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MDKNQANNLR EGARAGTDHA PEEHRIPRAT VARIMRHGSP PNSTITGDAK EAVDNCLVEF 60 CAVLIAAAVE ECRQDKRTTV TGDDLILALA NLGFEDYVRP LALYLRRYRE IEGNRPRARH 120 SSMAAAQGPT APAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 6e-25 | 26 | 110 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-25 | 26 | 110 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG121900.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813092.1 | 2e-76 | nuclear transcription factor Y subunit B-4-like | ||||
TrEMBL | A0A3L6PHB2 | 3e-75 | A0A3L6PHB2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Da01559.1.p | 3e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.5 | 5e-33 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG121900.1.p |