PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG121700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 164aa MW: 17498.7 Da PI: 4.5519

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG121700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	79	6.4e-25	1	81	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 m++ P n+ki+ dake v++c +ef + + a + c++++r t++gddl+ al++lGf+d v l +yl++yre+eg + Pavir.4KG121700.1.p 1 MRHGSPPNSKIAGDAKEAVDNCLAEFSAVLIRAAVEECRQDRRTTVTGDDLILALSNLGFDDNVRLLALYLRRYREIEGTR 81 78888*************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.0E-9	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.1E-20	2	86	IPR009072	Histone-fold
SuperFamily	SSF47113	4.38E-16	3	83	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MRHGSPPNSK IAGDAKEAVD NCLAEFSAVL IRAAVEECRQ DRRTTVTGDD LILALSNLGF 60 DDNVRLLALY LRRYREIEGT RPRARHTLMV ALEHPTAPAV EVEVQSPAPA SPGLDLQLGP 120 PQVRDITELG PHADVCAVWR AADAAAAAGT LKAPTGVDDE DEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-19	1	76	18	93	NF-YB
4awl_B	1e-19	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-19	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG121700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813092.1	2e-78	nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A3L6PHB2	8e-78	A0A3L6PHB2_PANMI; Uncharacterized protein
STRING	Pavir.Da01401.1.p	3e-73	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	4e-17	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Pavir.4KG121700.1.p