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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG106900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 9843.4 Da PI: 10.7381 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.7 | 3.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+g++KKA EL +LCda+v v++fss g+lye+s+ Pavir.4KG106900.1.p 9 KRIENETNRQVTFSKRRAGLFKKARELAILCDAQVGVLVFSSAGRLYEFSN 59 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.885 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-31 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.80E-41 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 1.5E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MVRGKTVIKR IENETNRQVT FSKRRAGLFK KARELAILCD AQVGVLVFSS AGRLYEFSNT 60 SMTSIVERYQ HMKEGNQLMS ASTEAKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedling roots and developing seeds. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG106900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641670.1 | 2e-45 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6VAM4 | 1e-36 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A0E0LBE3 | 2e-44 | A0A0E0LBE3_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WWA7 | 4e-45 | A0A0P0WWA7_ORYSJ; Os06g0347700 protein | ||||
STRING | Pavir.Da00991.1.p | 2e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-34 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG106900.1.p |
Publications ? help Back to Top | |||
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