 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.4KG079200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LBD |
| Protein Properties |
Length: 285aa MW: 30735.3 Da PI: 4.7773 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.4KG079200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 111.1 | 7.7e-35 | 11 | 107 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
aCaaCk++rr+C++dC+la+ fp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+ P +G+v +i++lqq+++q+
Pavir.4KG079200.1.p 11 ACAACKYQRRRCTPDCPLAEFFPHDRPRVFRNAHRLFGVSNILKTLDRAGPEKRREAMHCIIYESQAWDIYPASGCVPIIHDLQQRIRQA 100
7****************************************************************************************9 PP
DUF260 91 kaelall 97
+ +l ++
Pavir.4KG079200.1.p 101 ELDLRRV 107
9888765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MAAASGGAGA ACAACKYQRR RCTPDCPLAE FFPHDRPRVF RNAHRLFGVS NILKTLDRAG 60
PEKRREAMHC IIYESQAWDI YPASGCVPII HDLQQRIRQA ELDLRRVYAA IQAYRAAAAA 120
QGGGPVPDSD GDPLASASAP PPPFQLQPAT GDDDVAAEAY GGGGGWPSIT MYGGDQQQMV 180
MNAAAYDDVR QHYDMTTTSA AAVANMAGKL VPQQDHRFLV DATVVSQPEH QQQLTIQPAE 240
LDDEMSYFVN DGVDGDSEMP PESSMDSSEK KAMRAPKMES VNSF*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG670306 | 2e-38 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
