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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG073100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 422aa MW: 44947 Da PI: 6.6431 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 373 | 419 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 W E+e l ++v+++G+g+Wk I + + gRt+ ++k++w++ Pavir.4KG073100.1.p 373 WCLLEEETLRKGVELYGSGNWKDILSNNPdvfIGRTPVDLKDKWRNM 419 55669****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-13 | 364 | 421 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.937 | 365 | 421 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-14 | 367 | 420 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0079 | 369 | 421 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.35E-18 | 371 | 421 | No hit | No description |
Pfam | PF00249 | 8.0E-9 | 372 | 419 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MPRLTPADAT LILDHALGDP SVPAAAVHAL LAALPFPSDP TPRLRRAVLL RRLAADPVSA 60 SALDTLHLLA SLPASASPCP PPIAAAHIAV AGFLAASAPD FDAAAAALFA RPDGRARRAV 120 GEGGTPALAS DDAVAAVDQF EAAVGNSFSQ VVLRGLWGDR AAAEERVREL LAAEWAVIGP 180 SLLEVAAERI VGDGSIQTWR DAKEATRAKF RVLAGEEKTR QILGKLEEST SRVNPISTPE 240 FFKVMDALKT SSAELHSVVE DPLPAAKAAA DEVVATRVDR TVNLNAETGQ PAACGTAGSS 300 VLHEKNNGPN KGTPPSLMDW NATAQTFQWE DSPDPEGSEP ALRRPHLPSP RRTPVSPLPP 360 AENKNKRRRA RKWCLLEEET LRKGVELYGS GNWKDILSNN PDVFIGRTPV DLKDKWRNMM 420 R* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG073100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811007.1 | 0.0 | uncharacterized protein LOC112888859 | ||||
TrEMBL | A0A3L6RZF4 | 0.0 | A0A3L6RZF4_PANMI; Uncharacterized protein | ||||
STRING | Si006005m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-13 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG073100.1.p |