PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG054200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 305aa MW: 32196.3 Da PI: 6.5973 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7.1e-18 | 31 | 75 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie r+v fskRr g++KKA EL LC+a vav++fs +k Pavir.4KG054200.1.p 31 KRIEGVAARHVCFSKRRSGLFKKAAELAALCGAHVAVVVFSRADK 75 7999999**********************************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.31E-23 | 23 | 93 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-24 | 23 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.829 | 23 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.38E-31 | 24 | 92 | No hit | No description |
PRINTS | PR00404 | 2.5E-16 | 25 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-21 | 32 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-16 | 45 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-16 | 60 | 81 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAEAAERRRG EAGGEQRKRK KTLGRQKIEI KRIEGVAARH VCFSKRRSGL FKKAAELAAL 60 CGAHVAVVVF SRADKPYSLG IPSVDAVVDR YLYPASAAAG EAPAGGADPA VLEEFESEKE 120 RLDKAIAAEA RRREALIAAA RAAGVPDGDD VRRAGMPDLL ATLAALERVR AEAMQRVRMH 180 EAMVEEMTMQ ECAAAVSGDA GGAFYCAAGA GAFAADGGAS SSSSHQGVFY TQMLMGGDAN 240 HASMPFAPTM PPYLPPPPFN YGSHHNQLAC YGYDIGDDGS CHDAAAAYGM EGYHGTTTTC 300 NFFW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 20 | RRRGEAGGEQRKRKK |
2 | 16 | 20 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG054200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813008.1 | 1e-134 | MADS-box protein AGL71-like | ||||
TrEMBL | A0A2T7DXF8 | 1e-134 | A0A2T7DXF8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da00770.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-23 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG054200.1.p |