PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 478aa MW: 51015.8 Da PI: 9.2807

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG002600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.8	2.2e-24	222	266	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Pavir.4KG002600.1.p 222 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 266 79****************************************986 PP
2	QLQ	56.8	6.9e-20	147	181	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++ vPp+Ll++++ Pavir.4KG002600.1.p 147 VFTAAQWAELEQQALIYKYLMAGVAVPPDLLLPVR 181 5********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.9E-10	146	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.849	147	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.7E-14	148	181	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.346	222	266	IPR014977	WRC domain
Pfam	PF08879	6.1E-21	223	265	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
GSRGAGQAPA PGAVQEDRPP DSQRVRPAGG RDSIAIASKA NPSGFLPPIC RSPTDCPLPQ 60 AAASINGRHQ EPSNPLLTSL PTRLRRRPFP TPSACTFLVG LKEGGSEGWG WGEPVGARPS 120 MLSSASSAGA GMGVGGGYPP PQRGAAVFTA AQWAELEQQA LIYKYLMAGV AVPPDLLLPV 180 RPSPHSAAAA FSFASPGAAA SPFYHHHHPS LSYYAYYGKK LDPEPWRCRR TDGKKWRCSK 240 EAHPDSKYCE RHMHRGRNRS RKPVESKTAS PAHPSQQPQL STVTTTTRET APIDSLTVGG 300 KTHGLSLGGA GSSQLHVDAS NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRCFTIDSPT 360 ENSWNSLPSN VPPFTLSKSR DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG 420 AGGLLGNVKQ ENQPLRPFFD EWPGTRDSWS EMDDARSNRT SFSTTQLSIS IPMPRCD*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

GSRGAGQAPA PGAVQEDRPP DSQRVRPAGG RDSIAIASKA NPSGFLPPIC RSPTDCPLPQ  60
AAASINGRHQ EPSNPLLTSL PTRLRRRPFP TPSACTFLVG LKEGGSEGWG WGEPVGARPS  120
MLSSASSAGA GMGVGGGYPP PQRGAAVFTA AQWAELEQQA LIYKYLMAGV AVPPDLLLPV  180
RPSPHSAAAA FSFASPGAAA SPFYHHHHPS LSYYAYYGKK LDPEPWRCRR TDGKKWRCSK  240
EAHPDSKYCE RHMHRGRNRS RKPVESKTAS PAHPSQQPQL STVTTTTRET APIDSLTVGG  300
KTHGLSLGGA GSSQLHVDAS NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRCFTIDSPT  360
ENSWNSLPSN VPPFTLSKSR DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG  420
AGGLLGNVKQ ENQPLRPFFD EWPGTRDSWS EMDDARSNRT SFSTTQLSIS IPMPRCD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.8974	0.0	callus\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG002600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF515853	1e-145	EF515853.1 Zea mays putative growth-regulating factor 14 (GRF14) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811709.1	0.0	growth-regulating factor 5-like isoform X1
Swissprot	Q6AWY4	0.0	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A2T8JF37	0.0	A0A2T8JF37_9POAL; Uncharacterized protein
STRING	Pavir.Da02366.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11046	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-27	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Pavir.4KG002600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]