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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3NG317600.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 166aa MW: 19809.7 Da PI: 10.6866 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3NG317600.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
r+rW +eEd l +v+q+G++ W++++++m+ + R +k+c +rw +yl
Pavir.3NG317600.2.p 4 RQRWRPEEDAVLRAYVRQHGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53
89**********************************************97 PP
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2 | Myb_DNA-binding | 37.3 | 6.5e-12 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+ T eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w +
Pavir.3NG317600.2.p 59 KGSLTDEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
6778******************.*********.*****999999766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0009615 | Biological Process | response to virus |
GO:0009651 | Biological Process | response to salt stress |
GO:0009733 | Biological Process | response to auxin |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
GO:0010338 | Biological Process | leaf formation |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0045088 | Biological Process | regulation of innate immune response |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0050832 | Biological Process | defense response to fungus |
GO:0000793 | Cellular Component | condensed chromosome |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MKERQRWRPE EDAVLRAYVR QHGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLTDEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRDSRRPPPE 120 PSPDQRGSSN THYPAFLEQY DISLLPQQKL YSKAHEYSLT FFFLK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF126489 | 1e-177 | AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds. |
GenBank | AF143447 | 1e-177 | AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds. |