PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG307900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 276aa    MW: 30206.4 Da    PI: 9.6119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG307900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18121170255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+ +a+ +l+g
  Pavir.3NG307900.2.p 121 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFATAEEAALAYGQAAYCLRG 170
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.70E-28120180No hitNo description
SuperFamilySSF541711.83E-21121179IPR016177DNA-binding domain
SMARTSM003807.3E-33121184IPR001471AP2/ERF domain
PROSITE profilePS5103221.918121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-31121179IPR001471AP2/ERF domain
PRINTSPR003677.9E-11122133IPR001471AP2/ERF domain
PfamPF008471.4E-12122170IPR001471AP2/ERF domain
PRINTSPR003677.9E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQKRLAQPGS TSNVDQHIRR AADYFNKEED PRMSKQGPQM AAAVNLPGPG EDLMRALEPF  60
LLADAPPSPL VMPPATHLTP AQMQFIQAQL HLQRNPGLGP RAQPMKPAVP VPAAARRPQK  120
LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FATAEEAALA YGQAAYCLRG DAARLNFPDV  180
AASRAPVGPA VDAKLQAICA TNHHRRRVVV VQGPREAGPS RSVPGSEDEM SYSTPAAAAE  240
MGQLDLSEGP WDEAESFALR KYPSYEIDWD SLLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17120178463ATERF1
3gcc_A3e-17120178463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.39971e-118callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG307900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7423451e-134KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.11e-111ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2T7D7171e-111A0A2T7D717_9POAL; Uncharacterized protein
STRINGPavir.J13316.1.p1e-148(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.15e-36ERF family protein