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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3NG304200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 395aa MW: 41855 Da PI: 4.2102 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3NG304200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 51 | 100 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g
Pavir.3NG304200.1.p 51 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 100
789******.7*********33....35**********************99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MARKRKASDS VDIEVGNDVL NSPPLLPSTG ACAWASVVAA AAQQQQRGRK RFVGVRQRPS 60 GRWVAEIKDT IQKIRVWLGT FDTAEEAARA YDEAACLLRG SNTRTNFWPR PSPAAAAAAL 120 PVQPPPPPAV ASSPAPALPP KVTNLLLLRL RARNQQLFSA TAAQQEAALL QSPLCEGTNG 180 GGDGEECAFQ VDDFLSYDCG SSDGTSSQEM EDEDEEEEEE ELDFQFMDQQ HAASPTAGCE 240 GGLCSPFDVV AAELDGAVEA DDGEPESAVQ ELMRRRMDYE RKISASLYAL SGVSECLRMR 300 HGGAAAAAGV RDQLTGLREA CRKKQRDEVQ QQHQEQAPSP EAAEDGNGKA AQDECSAGSG 360 APEATTSSSS SEASDGDGDS DVLLWSSLDL APIC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT067109 | 1e-110 | BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds. |
GenBank | JX469920 | 1e-110 | JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds. |