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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.3NG294600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WRKY |
| Protein Properties |
Length: 358aa MW: 38191.2 Da PI: 10.7161 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG294600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 99.4 | 2.2e-31 | 291 | 348 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+
Pavir.3NG294600.1.p 291 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 348
9*************************988****************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MEEVEVANRA AVESCQRVLA LLSQSQQQDP ALLKSIASET GEACAKFRKV TALLSNGGSS 60
GHARGRFSRR GRPAGSFTLK SLLGSSSDTP SELMPSTAAA PSPSTSYAQL RARISGAPDP 120
PGLDLASSSS KSGTHPFGAP KMVQPLSVQF QIGNVAHRYP FHQQPSRQKL QAEMFKRSNS 180
GISLKFDSPS PSGGAGTMSS ARSFMSSLSM DGSVASLDGK RPFHLVGAPV ASDSADANRA 240
PKRRCTGRGQ DGTGKCATTG RCHCSKRRKL RIKRSIKVPA ISNKIADIPP DEYSWRKYGQ 300
KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT YEGEHNHTRL PAQSAQT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
