PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.3NG289200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 522aa MW: 60259.8 Da PI: 8.4439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG289200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.5	7.6e-07	11	45	1	36
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCs 36 ++Yn+YA +vGFsvrk +sk + +g+ ++ fvC+ Pavir.3NG289200.1.p 11 DMYNTYAGQVGFSVRKGNSKLR-GDGTSRQKYFVCK 45 58*************87765.889899****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	7.2E-11	153	199	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	372	410	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-5	385	412	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MAFQSGKKAF DMYNTYAGQV GFSVRKGNSK LRGDGTSRQK YFVCKSCSVC NARVQFSVSR 60 EGIWTVQKVV LEHNHYLAIP NKREKLRSQQ SVQEADRKLI GEIRKAGMQP AQVYEFMKEF 120 YGGADKVPFS RMDCNNEIGH GQSIMDYTCF GDVVSFDTTF QTNKFEMPFA PILGANHHKQ 180 TIIFGAVLLF NETIESFKHP EKFLPDFKRS VYEDRSEFYF QKMWDELLHE YELEDNEWMS 240 NLYALRTKWV AMYRDSFTAD MNSTQRSEGM NNVSKKRFRR KLGLSELLVE CEKVCNSLRR 300 NELEEDFNSR RKSPVTCIPR LPLLKTAAES YTGRMYKELE EEFKEQFSFS CNLIQTEGSI 360 LTYMVTHMHS DYGAIVTFNK ADVSITCACR KYESIGILCK HAFKVLNVNN VFILPPKYIL 420 HRWTKYAIRG FYIEKQGSEM ESLQTHAARI SRKATSVALK CSLSKELLDD LEKAIDKLDS 480 EADNSLSKMQ EQSNEVPLVS TDYTTDTLKG TIWFRVPQVV K*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MAFQSGKKAF DMYNTYAGQV GFSVRKGNSK LRGDGTSRQK YFVCKSCSVC NARVQFSVSR  60
EGIWTVQKVV LEHNHYLAIP NKREKLRSQQ SVQEADRKLI GEIRKAGMQP AQVYEFMKEF  120
YGGADKVPFS RMDCNNEIGH GQSIMDYTCF GDVVSFDTTF QTNKFEMPFA PILGANHHKQ  180
TIIFGAVLLF NETIESFKHP EKFLPDFKRS VYEDRSEFYF QKMWDELLHE YELEDNEWMS  240
NLYALRTKWV AMYRDSFTAD MNSTQRSEGM NNVSKKRFRR KLGLSELLVE CEKVCNSLRR  300
NELEEDFNSR RKSPVTCIPR LPLLKTAAES YTGRMYKELE EEFKEQFSFS CNLIQTEGSI  360
LTYMVTHMHS DYGAIVTFNK ADVSITCACR KYESIGILCK HAFKVLNVNN VFILPPKYIL  420
HRWTKYAIRG FYIEKQGSEM ESLQTHAARI SRKATSVALK CSLSKELLDD LEKAIDKLDS  480
EADNSLSKMQ EQSNEVPLVS TDYTTDTLKG TIWFRVPQVV K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG289200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243258	0.0	AC243258.1 Panicum virgatum clone PV_ABa103-H10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008670948.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q10HU3	0.0	Q10HU3_ORYSJ; Os03g0576100 protein
STRING	Sb06g016820.1	1e-178	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15086	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-66	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3NG289200.1.p