PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG283000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92999.2 Da    PI: 6.8117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG283000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-182380457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Pavir.3NG283000.1.p 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80
                         6789****************************************************97 PP
2START161.18.6e-511723792204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +e++ v+ +g  g
  Pavir.3NG283000.1.p 172 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRHVEIVHVVPTGngG 260
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++al++l   Rdf+++Ry+  l +g++vi+++S+++ +  p     + ++Rae+lpSg+li+p+++g+s + +v+hvdl+++
  Pavir.3NG283000.1.p 261 TIELIYMQTYALTTLTGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnAPTFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNAK 350
                          *************99988****************************98887889************************************ PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s  + ++k++ a+l++ +
  Pavir.3NG283000.1.p 351 SVPEVLRPLYESPKILAQKMTAAALRHIR 379
                          ************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.241781IPR001356Homeobox domain
SMARTSM003898.5E-151985IPR001356Homeobox domain
SuperFamilySSF466891.71E-162084IPR009057Homeodomain-like
CDDcd000861.60E-152282No hitNo description
PfamPF000469.7E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-182480IPR009057Homeodomain-like
CDDcd146862.40E-674113No hitNo description
PROSITE profilePS5084827.519162362IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-23170354IPR023393START-like domain
SMARTSM002345.7E-42171381IPR002913START domain
PfamPF018528.4E-49172379IPR002913START domain
SuperFamilySSF559613.16E-36172382No hitNo description
PfamPF086708.2E-38710852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MAAVASRERL SPGSAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG  120
YMKNQLHSPS VATTDTSCES VVTSSQHYQP QNPAVPPPPK RDANNPAGLL AIAEETLAEF  180
MSKATGTAVN WVQMVGMKPG PDSIGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS  240
WYRDCRHVEI VHVVPTGNGG TIELIYMQTY ALTTLTGPRD FWTLRYTSGL DDGSLVICER  300
SLTQSTGGPC GPNAPTFIRA EVLPSGYLIR PCDGGGSMIY IVDHVDLNAK SVPEVLRPLY  360
ESPKILAQKM TAAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG FNDAVSGFPD  420
DGWSPLLSSD GPEDITITVN SSPNKLVGSH VSPSPFFSAI GSGIMCAKAS MLLQNVPPAL  480
LVQFLREHRS EWTDPGVDAY SAASLRANPY AVPGLRAGGF IGNQVILPLA RTLEHEESLE  540
VIRLEGHGFS HDEVLLSRDM FLLQLCSGVD ENAPGACAQL VFAPIDESFA DDAPLLPSGF  600
RVIPLDDKMD MPSATRTLDL ASALEVGSGA GLRAPSNASG ACTTRSVLTI AFQFSFENHL  660
RESVAAMARQ YVRGVMASVQ RVAMAIAPTR LGSHIQLKHP HPPGSPEALA LATWIAKSYR  720
VHTGMEIRWS DTEGAENPLM PFWKHSDAIL CCSLKPPFTL KFANSAGFDI LESTMVNIQD  780
MPLEAVLDDE GRKALFTELP KIMQQGWAYL PGGACQSSMG RQASYEQVVT WKVVGDDGVP  840
QGLALMLSNW TFI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG283000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0674830.0BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808876.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A2S3HFV40.0A0A2S3HFV4_9POAL; Uncharacterized protein
STRINGPavir.Cb00023.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]