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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3NG279000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
TCP |
Protein Properties |
Length: 288aa MW: 30059.7 Da PI: 6.3536 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3NG279000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 108.4 | 1.1e-33 | 30 | 143 | 1 | 102 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesss 79
aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a ai+el+++ ss++a + +++++
Pavir.3NG279000.1.p 30 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpvgasSSPPA--AGDDAEV 117
6899*************************************************************9999998865322222..2233333 PP
TCP 80 ssasnsssg..........kaaksaakskksqk 102
s++++s+s+ + + + +
Pavir.3NG279000.1.p 118 STSETSKSSvlslangptdN-------ASTAAH 143
33332222233333222221.......111111 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MEEVGMERAA LNGGTAAAAA WRTCRVARAA AGGKDRHSKV VTARGLRDRR VRLSVPTAIQ 60 FYDIQDRLGV DQPSKAIEWL IRAAAGAIDE LPSLDCSFAL PVGASSSPPA AGDDAEVSTS 120 ETSKSSVLSL ANGPTDNAST AAHQVNHAYN GGNTGNGGSF AELLNCSAND SKPMQQQPTL 180 AYYAAQLPSS HAAPAMSLET MPQLAFLQEQ PHPAVGFDRG TLQSNVTVAA PLWPPSQQAC 240 FLQRLAAAPV DAAGLPFFLG GGTAAPPVTV NAEPRLQLWD FKQERKT*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |