PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Pavir.3NG276000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YA

Protein Properties

Length: 107aa MW: 11827.6 Da PI: 11.4324

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG276000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	23.6	1.7e-07	32	68	2	38
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +p++V KQy++I++ R++R ++ee + ++k r p+ Pavir.3NG276000.1.p 32 APVFVREKQYDAIIRLRERRRRVEEAREGRSKLRNPF 68 69***********************888878888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02045	5.3E-4	33	68	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MSVENNGSSE MGAGQRMAVG RKLLPPITPG GAPVFVREKQ YDAIIRLRER RRRVEEAREG 60 RSKLRNPFQD VLKGTLSRPR ATRKVPMEAS WCHSAPPKET VACPSS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG276000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808608.1	8e-28	uncharacterized protein LOC112886824
Refseq	XP_025808609.1	8e-28	uncharacterized protein LOC112886824
Refseq	XP_025808610.1	8e-28	uncharacterized protein LOC112886824
Refseq	XP_025808611.1	8e-28	uncharacterized protein LOC112886824
TrEMBL	A0A2S3HFJ8	2e-26	A0A2S3HFJ8_9POAL; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG276000.1.p