 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG273400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
YABBY |
| Protein Properties |
Length: 183aa MW: 20659.4 Da PI: 9.0388 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG273400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 236.9 | 4.6e-73 | 5 | 170 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92
+ + ++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ l+ +++ + + +e+ k ++ n + + ++s+
Pavir.3NG273400.1.p 5 IAAAVDHVCYVHCNFCNTVLAVSVPGNSMLNTVTVRCGHCTNLLSVNLRALMHSLPEQQD--QLQLFDSHENIKAHGINGSHLEFGSSSS 92
66789***************************************************9886..4455567999999999999999999999 PP
YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+ +++ l++n+++ ++++ +PPekrqr+Psaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
Pavir.3NG273400.1.p 93 KFRLPMMYLPQNQHHLLQEQTLNAHPPEKRQRIPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170
999999999*99999999888899****************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MSSQIAAAVD HVCYVHCNFC NTVLAVSVPG NSMLNTVTVR CGHCTNLLSV NLRALMHSLP 60
EQQDQLQLFD SHENIKAHGI NGSHLEFGSS SSKFRLPMMY LPQNQHHLLQ EQTLNAHPPE 120
KRQRIPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL SPRTGGWQEA 180
RR*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035812 | 2e-61 | BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds. |
| GenBank | BT041668 | 2e-61 | BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds. |
| GenBank | BT068409 | 2e-61 | BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds. |
| GenBank | KJ726849 | 2e-61 | KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds. |
