PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG264400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 302aa    MW: 32906.6 Da    PI: 7.4762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG264400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-12411211499
                          T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + l++p kf++           +  +l+d+  rsW+v l  ++  +  + ++GW +Fv+ang+ +g  +vF++ g  +f   v +f++
  Pavir.3NG264400.1.p  41 S-LSIPPKFTAGRpwR----AATAGKLRDPAARSWDVDLHRDGDHRLSFTGRGWLGFVSANGISAGQLLVFEHRGGLDF--AVDLFDA 121
                          3.89999999655332....4445799************545554448888*********************7665555..8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1435124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-1336124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-637122IPR003340B3 DNA binding domain
PfamPF023624.0E-1041121IPR003340B3 DNA binding domain
CDDcd100172.07E-1142120No hitNo description
PROSITE profilePS5086311.32142122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-11181260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-9183260IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-7184256No hitNo description
PROSITE profilePS508637.542189275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
KAGGALPSYR LVWLWQQPTE QAAAGASSPR SCCLASFFEL SLSIPPKFTA GRPWRAATAG  60
KLRDPAARSW DVDLHRDGDH RLSFTGRGWL GFVSANGISA GQLLVFEHRG GLDFAVDLFD  120
ASGCLSDDGF RDEAAEQKRT TTETTAECRR RPEATGVKRR KRSPSSTADT GDDDTLWRRI  180
ERPYQLRYLD LSKSFCERLG WTSSRDVELL VAGGDDEQRR WPVSVKVSAK QSGMMCAGWT  240
EFAQGNGVGL SDACAFVSLQ GSHGGDWSAS CPRHQGQGHH HQLTSPDGPS FSPVYDPFAP  300
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG264400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432282e-96AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807013.11e-115putative B3 domain-containing protein Os04g0346900
TrEMBLA0A3L6T4301e-130A0A3L6T430_PANMI; Uncharacterized protein
STRINGPavir.Cb00148.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168021012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.16e-07VERDANDI