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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG250000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25301.9 Da PI: 4.9697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 63 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + kr++lg+f+taeeAa+ ++ a+ +l+g Pavir.3NG250000.1.p 63 QFRGVRQRP-WGKFAAEIRDP-----NlgKRVWLGTFDTAEEAAAVYDGAAIRLRG 112 69*******.**********9.....556*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-30 | 62 | 121 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.932 | 63 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 63 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.26E-33 | 63 | 122 | No hit | No description |
SMART | SM00380 | 1.6E-38 | 63 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-11 | 64 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDAPGRDHFA DPDDATDSDS DDSRRRSVRV IDLLPPQRKK LGHFPSYDRS GGKWQGQGRG 60 RRQFRGVRQR PWGKFAAEIR DPNLGKRVWL GTFDTAEEAA AVYDGAAIRL RGRRAVTNFP 120 LSPSSATPFS SVPSPMSSTT IASTPTPPVC SSEVEISSAS TPSTQSSSVI DADEDVVGMR 180 WFEDKPFESM EFCLPSAPTG SQCEFGGLGD LDDLFSLEPE PASHNCPGGN LHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 62 | 125 | 4 | 68 | ATERF1 |
3gcc_A | 1e-23 | 62 | 125 | 4 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG250000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828366.1 | 1e-75 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A2T7CJE1 | 2e-76 | A0A2T7CJE1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J29117.1.p | 1e-146 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 7e-18 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG250000.1.p |