PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG243200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 26659 Da PI: 6.2309 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.6 | 2.2e-09 | 102 | 201 | 26 | 89 |
FAR1 26 geitkrtfvCskegkreeekkk.....................................tekerrtraetrtgCkaklkvkkekdgkwev 78 +e k fvC+keg+ ++ k+ k+r+++ ++t+Cka++++k+ ++ +v Pavir.3NG243200.1.p 102 REQHKVIFVCNKEGHGRKAKEGdpanesddsndekrgsepensnkgdgdedaekrkkldGGKKRKRERMHHTDCKARMVIKLI-VDRCHV 190 4566788********999988899*****************************99999878888899999*************.9999** PP FAR1 79 tkleleHnHel 89 + + +HnHel Pavir.3NG243200.1.p 191 IFFAPDHNHEL 201 **********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-7 | 102 | 202 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDLNEIPPEF HCDFLDCSDA NPSYCTQAVE AIALGGEHDI VQVTGHQVLS NVEATVDNCN 60 LAEKPKDVQT IADSTTGVAD VEEVWSTPPI PYIGQIFSSL TREQHKVIFV CNKEGHGRKA 120 KEGDPANESD DSNDEKRGSE PENSNKGDGD EDAEKRKKLD GGKKRKRERM HHTDCKARMV 180 IKLIVDRCHV IFFAPDHNHE LIVKSSLKKF MRSHKGIPKT EKDFIALLHG CNLSTGRIM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG243200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6QSR2 | 2e-87 | A0A3L6QSR2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Cb00546.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG243200.1.p |