PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG221700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 598aa    MW: 63054.2 Da    PI: 6.623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG221700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06218239526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f ++  C++Gd C +aHg
  Pavir.3NG221700.1.p 218 PCPEFKKGAGCRRGDMCEYAHG 239
                          8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.13E-849133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-952133IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.22252123IPR020683Ankyrin repeat-containing domain
CDDcd002046.19E-754128No hitNo description
PROSITE profilePS500889.08488123IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MADASKAAAA VSARLLELAA DDYAAALGDL LAAHPSLADE PAPWYSPARG AEPMTPLMVA  60
AAYGSVSCLE ILLSPPHLVD PNRASPASLS TALHLAAGGG ASSAPAAVSR LLAAGADPAL  120
LDHLQRRPSD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPEELRPLYM SAGSRSAMEM AAAMGMGLPS  300
PGASFTPPLS PSGGGTGVAG AWPQPNVPAL CLPGSAGNLH LSRLRTSLSA RSMAVDELLS  360
SADYDGLVGS PASVRSARGK TLVPSNLDDL FSAEMAGAAA SHSPRYADQG GAAFSPTRKA  420
AMLNQFQQQQ SLLSPRATAA TVIPEPVSPM SSRLLAALAQ REKMQQQTLR SMSSRDLGSD  480
ASVLVGSPVT SSWSKWGIPS GTPNWGADDE ELGRLKRSSS FELRSGANGD EPDLSWVNTL  540
VKEPTPEKPS INRTTAIESI GTLSQATSHE GIGGDEDNTA GVIGGWLEQL QLDEMVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.190031e-107callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG221700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808908.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A2T7EHH20.0A0A2T7EHH2_9POAL; Uncharacterized protein
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-129CCCH-type zinc finger protein with ARM repeat domain