PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG203200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 537aa    MW: 59156.6 Da    PI: 7.3993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG203200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.95.9e-402934591171
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cAeavs+g++ +a++lL ++++++sp+gd+ qRla++f+e+L+ rla+  s+++++    + ++++ +e+l+a+ l  +v+ +
  Pavir.3NG203200.1.p 293 LRTLLIHCAEAVSAGNHLNATELLRQINQRSSPTGDASQRLAQCFAEGLELRLAG--SGVANS----KPPQRTCVEVLKAYLLSMQVCCF 376
                          6789***************************************************..555544....44445589*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                            +++     aI +av+g ++vHi+D+++  G+ W+ Ll a a+ ++gpp++RiTg++ p++g   + +++etg rL++fA++
  Pavir.3NG203200.1.p 377 GMVAFKFSYMAITKAVAGRKKVHIVDYGVHLGFRWLLLLGAWAASEGGPPEVRITGIDFPQPGfhPAARIKETGCRLSDFARK 459
                          **************************************************************999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.708267536IPR005202Transcription factor GRAS
PfamPF035142.0E-37293459IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAATPEDPGD PNEPFSPSVG DGEDPAWSDD VVLPFIRRML MEDDSEDDDI LYQYYPELLQ  60
TEQSFAQIDT LGLRCVFLFS RQHHHRHRLL CFGSATTNTT GSDTFMLAPA YGDVNTTWPY  120
NPEEFSQLLL SSSSSAGLQQ RQSSCCFHLQ DGAEEGRVPA AAVGVGGRVI SMDIMLNLAF  180
LKGMEEASKF LPATNNDGRG SKKKNWYSWD WEDDALEAEA ADVISAAKLT APEPEGTTGE  240
VAQGVILKGY EVAMQKKHGP SSVPGGGAEA EEEKSKSSQR RQRRSSSNEA VDLRTLLIHC  300
AEAVSAGNHL NATELLRQIN QRSSPTGDAS QRLAQCFAEG LELRLAGSGV ANSKPPQRTC  360
VEVLKAYLLS MQVCCFGMVA FKFSYMAITK AVAGRKKVHI VDYGVHLGFR WLLLLGAWAA  420
SEGGPPEVRI TGIDFPQPGF HPAARIKETG CRLSDFARKR AWRPVQVPRH RCHQVGDGFC  480
GGPQHRTRGG ARRQWHVPFW EADGRGRRRR HREPQPQGHG PRKHPEDAAR CVRPLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-172824598185Protein SCARECROW
5b3h_A4e-172824597184Protein SCARECROW
5b3h_D4e-172824597184Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1504511RGRRRRHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG203200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316671.11e-108scarecrow-like protein 34
TrEMBLA0A1B6PU881e-107A0A1B6PU88_SORBI; Uncharacterized protein
STRINGPavir.Cb00873.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-41GRAS family protein