PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.3NG192700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 625aa MW: 69589.6 Da PI: 6.0755

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG192700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.8	2e-103	245	616	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 + lLl+cA+av+++d a+ lLa+++ +asp+gd+ qRla++f+e+L+arla+++s+ly++l ++ts ++ l a++lf ++ + Pavir.3NG192700.1.p 245 QALLLRCAQAVATDDRGTAHDLLAQIRRHASPTGDAAQRLAHCFAEGLEARLAGTGSRLYHSLMLRRTS---AVHFLRAYQLFMAACCCK 331 679***********************************************************99999...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 k+++ N++I +av+ +r+Hi+D+++++G+QWp Ll+ La+R++gpp++RiTg++ p++g + +++etg+rL++ A+e+gvpf f+ Pavir.3NG192700.1.p 332 KVAFAFSNKTISDAVKARRRLHIVDYGLGYGFQWPGLLRGLAARDGGPPEVRITGIDLPQPGfrPAYQIQETGRRLSDCAREFGVPFMFR 421 *********************************************************9999*********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +a + e++++e+L++++ E+l+V++ + +l+des l +rdevL + +++P+v+++ + ++++ F +rf eal +ysa Pavir.3NG192700.1.p 422 G-IAAKRETVSPEDLDIDRAEVLVVSSLCHFRHLMDESIVLGRpsPRDEVLGNIGRMQPDVFIHGVMNGGYGTTYFPTRFREALFHYSAQ 510 .69999****************************98766669**************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fd l+a++pr+s+er+ vEr ++gr++ nv+acega+r+er et+++W++r ++aG++++pl+ ++ak + +r + + + v+e++++ Pavir.3NG192700.1.p 511 FDLLDATVPRDSQERMLVERDIFGRAALNVIACEGADRVERPETYKQWQARNQRAGLRQLPLKPEVAKVVLDKVRDNYHKDFIVDEDQAW 600 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+ Wk+r L+ +S W Pavir.3NG192700.1.p 601 LLHRWKGRVLYGLSTW 616 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.773	218	597	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-101	245	616	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MDAAPPEPEQ EQEFLSFLHP DPDPPSPSVF LDLPPTPPPP TRHDGDFDDM VLPYVARLLM 60 DEDEDSFFYQ YPDHPALLQA QMPFAQILAD AAQTCTSSSG SASASTSPSC SAHTDSDRSP 120 TSDAAADMDM VTSAFLRGME EATKFLPAPT DNAGLLSRRR AAGDDAPDPE ARRATKLMLP 180 DPDDADTRQM FDEMMLHERD ICMKGVQVQR LSISTTDTNK PNKAQAPRRR GRRSSTSTDD 240 AVDLQALLLR CAQAVATDDR GTAHDLLAQI RRHASPTGDA AQRLAHCFAE GLEARLAGTG 300 SRLYHSLMLR RTSAVHFLRA YQLFMAACCC KKVAFAFSNK TISDAVKARR RLHIVDYGLG 360 YGFQWPGLLR GLAARDGGPP EVRITGIDLP QPGFRPAYQI QETGRRLSDC AREFGVPFMF 420 RGIAAKRETV SPEDLDIDRA EVLVVSSLCH FRHLMDESIV LGRPSPRDEV LGNIGRMQPD 480 VFIHGVMNGG YGTTYFPTRF REALFHYSAQ FDLLDATVPR DSQERMLVER DIFGRAALNV 540 IACEGADRVE RPETYKQWQA RNQRAGLRQL PLKPEVAKVV LDKVRDNYHK DFIVDEDQAW 600 LLHRWKGRVL YGLSTWVADD VVCR*

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MDAAPPEPEQ EQEFLSFLHP DPDPPSPSVF LDLPPTPPPP TRHDGDFDDM VLPYVARLLM  60
DEDEDSFFYQ YPDHPALLQA QMPFAQILAD AAQTCTSSSG SASASTSPSC SAHTDSDRSP  120
TSDAAADMDM VTSAFLRGME EATKFLPAPT DNAGLLSRRR AAGDDAPDPE ARRATKLMLP  180
DPDDADTRQM FDEMMLHERD ICMKGVQVQR LSISTTDTNK PNKAQAPRRR GRRSSTSTDD  240
AVDLQALLLR CAQAVATDDR GTAHDLLAQI RRHASPTGDA AQRLAHCFAE GLEARLAGTG  300
SRLYHSLMLR RTSAVHFLRA YQLFMAACCC KKVAFAFSNK TISDAVKARR RLHIVDYGLG  360
YGFQWPGLLR GLAARDGGPP EVRITGIDLP QPGFRPAYQI QETGRRLSDC AREFGVPFMF  420
RGIAAKRETV SPEDLDIDRA EVLVVSSLCH FRHLMDESIV LGRPSPRDEV LGNIGRMQPD  480
VFIHGVMNGG YGTTYFPTRF REALFHYSAQ FDLLDATVPR DSQERMLVER DIFGRAALNV  540
IACEGADRVE RPETYKQWQA RNQRAGLRQL PLKPEVAKVV LDKVRDNYHK DFIVDEDQAW  600
LLHRWKGRVL YGLSTWVADD VVCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-43	248	616	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG192700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827844.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3L6PIF0	0.0	A0A3L6PIF0_PANMI; Scarecrow-like protein 9
STRING	Pavir.J31658.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-139	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG192700.1.p