PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG192500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 311aa MW: 34518.4 Da PI: 6.4033

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG192500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	52.5	9.6e-17	181	269	2	93
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL+ cA+av+ +d+++a++lL++++++as++gd +qRla++f+++L+arl++++s+l + l+ ++ s +e l+a++l+ ++ + Pavir.3NG192500.1.p 181 RTLLILCAQAVAVNDHTRARELLKQIKQHASETGDVTQRLAQCFAKGLEARLVGTGSQLWQLLEEERLS---IVEFLKAHNLYMAACCFN 267 789********************************************************9999888888...999999999999998776 PP GRAS 92 kf 93 k+ Pavir.3NG192500.1.p 268 KV 269 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.594	154	310	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-14	181	269	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEDDIDDKIS DHPALLRVQQ PFAQILSSTF GTNNADTERA NDLLQGGSGD ALNSALSEGT 60 NSVGAFLKDK EESIVLFPRE NIFRREELAN QMPSESSNKS RFRKMYNRYG NLEEVRTSKA 120 AMAIKVLEDT CVHEMLDDMM LCGHEICIRD IEKLRISMAN EVENSRNRGG RKVVSNVVDI 180 RTLLILCAQA VAVNDHTRAR ELLKQIKQHA SETGDVTQRL AQCFAKGLEA RLVGTGSQLW 240 QLLEEERLSI VEFLKAHNLY MAACCFNKVV LDFSIMTIVG GKLQSGGGTH PPNPEGEKLG 300 GSKRFCLTRM *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	287	GGKLQSGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG192500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978277.1	1e-111	scarecrow-like protein 33
TrEMBL	A0A3L6T348	1e-115	A0A3L6T348_PANMI; Scarecrow-like protein 33
STRING	Pavir.J04205.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP41406	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	2e-28	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Pavir.3NG192500.1.p