PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG184800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 146aa    MW: 15250.1 Da    PI: 9.7388
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG184800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000655274123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg+ F +   L  H  +H
  Pavir.3NG184800.1.p 52 FQCRTCGRAFATFQALGGHRTSH 74
                         89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-95276IPR007087Zinc finger, C2H2
SMARTSM003550.325274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975279IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-652121No hitNo description
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139126.0E-9101121IPR007087Zinc finger, C2H2
SMARTSM0035531102123IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTTTTARPTP PATNLLRLFL TLSPASRVIA KQQGQGGGCR ATRLDGAGAG EFQCRTCGRA  60
FATFQALGGH RTSHKRPRVR ADGLDLLFGA RPGKGAAASD VHRCNTCGVV FSTGQALGGH  120
RGHDDDIEDE DASHLSTATS FIKFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG184800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.13e-44zinc finger protein ZAT12
TrEMBLA0A3L6PK632e-43A0A3L6PK63_PANMI; Zinc finger protein ZAT8-like
STRINGPavir.Cb00699.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-18C2H2 family protein