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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG175100.3.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C3H |
| Protein Properties |
Length: 402aa MW: 43203 Da PI: 6.4294 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG175100.3.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 35.3 | 1.9e-11 | 98 | 123 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C++++++GtC++G +CkF+H+
Pavir.3NG175100.3.p 98 PGEPDCSYYLKFGTCRFGIKCKFNHP 123
5789*********************8 PP
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| 2 | zf-CCCH | 25.9 | 1.7e-08 | 250 | 271 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25
e+C++++ G Ck+G Ck+ H
Pavir.3NG175100.3.p 250 EECKYYSTPGGCKFGTACKYLH 271
89******************** PP
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| 3 | zf-CCCH | 33.7 | 6e-11 | 296 | 320 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C+f++rtG Ck+ +CkF+H+
Pavir.3NG175100.3.p 296 GEKECPFYMRTGSCKFATNCKFHHP 320
7899********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.896 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.5E-5 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-8 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.63E-5 | 102 | 125 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.343 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0025 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.59E-5 | 250 | 274 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-5 | 250 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 252 | 273 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.896 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.9E-5 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.7E-8 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.63E-6 | 297 | 321 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.0E-4 | 300 | 319 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MADAEANTQP PDAAESPIAS LSPSSVGAAD ADAIEKQLAG LGIAVAGGGG FPEPSGWDDV 60
PVPVAVGGGD EVAGEKVRGP PPAPAGAADG KVRFPRRPGE PDCSYYLKFG TCRFGIKCKF 120
NHPSRKKKSS RARGSGSSGS GSNSSSNKTS SPDDDQAPRE EYEGLVPDIS DSVTFHDKES 180
SSNSGNHRKT SNEVIDIKKG RMESKEKISE ELEKGVYFKK LDETNITNQK ILKGVKDKRK 240
ETFLEGSVQE ECKYYSTPGG CKFGTACKYL HREGKEGKAE VEKVELNFLG LPLRPGEKEC 300
PFYMRTGSCK FATNCKFHHP DPSNVASKEP VLEHENGDNP QQSAQGPSQP SVPIWPEQRA 360
LNEQHVPFLA PAPSYSAGMI PPQGMYPSPD WTGYHQVNVL Y*
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