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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG154100.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28070.9 Da PI: 4.1668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Pavir.3NG154100.6.p 12 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 63 79*****999.**********8...2.489************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.28E-31 | 12 | 70 | No hit | No description |
Pfam | PF00847 | 6.3E-14 | 12 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 13 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.0E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKGKGGPENT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM 60 YGEVARTNFP RQSAATSSQV APAATSAQVA PAAVGSLLPS TSCESTTTSN HSDIASTALK 120 PEVSDISSSL KVEDTVVTEA GSHRSEVISG SSVQHEDHPN TQAIAPNVVD KEVFEPLEPI 180 IANLPEGEDD GFDIEEMLRM MEADPQNKGG VDAGIGQPFY LDGLDSSVLE SMLQSEPQPY 240 SMSGEPDMFL AGFESPGFFE GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-17 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.245 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG154100.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810002.1 | 1e-152 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
Refseq | XP_025810003.1 | 1e-153 | dehydration-responsive element-binding protein 2B-like isoform X3 | ||||
Swissprot | Q5W6R4 | 1e-61 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A3L6SUI6 | 1e-160 | A0A3L6SUI6_PANMI; Dehydration-responsive element-binding protein 2B-like | ||||
STRING | Pavir.Cb01298.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 1e-24 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG154100.6.p |
Publications ? help Back to Top | |||
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