PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG154100.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 263aa    MW: 28070.9 Da    PI: 4.1668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG154100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201263156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         +gy+GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Pavir.3NG154100.3.p 12 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 63
                         79*****999.**********8...2.489************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-311270No hitNo description
PfamPF008476.3E-141263IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211370IPR001471AP2/ERF domain
SMARTSM003805.1E-341376IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-221371IPR016177DNA-binding domain
PRINTSPR003678.0E-111425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-321471IPR001471AP2/ERF domain
PRINTSPR003678.0E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKGKGGPENT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM  60
YGEVARTNFP RQSAATSSQV APAATSAQVA PAAVGSLLPS TSCESTTTSN HSDIASTALK  120
PEVSDISSSL KVEDTVVTEA GSHRSEVISG SSVQHEDHPN TQAIAPNVVD KEVFEPLEPI  180
IANLPEGEDD GFDIEEMLRM MEADPQNKGG VDAGIGQPFY LDGLDSSVLE SMLQSEPQPY  240
SMSGEPDMFL AGFESPGFFE GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-171470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.2450.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG154100.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810002.11e-152dehydration-responsive element-binding protein 2B-like isoform X2
RefseqXP_025810003.11e-153dehydration-responsive element-binding protein 2B-like isoform X3
SwissprotQ5W6R41e-61DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A3L6SUI61e-160A0A3L6SUI6_PANMI; Dehydration-responsive element-binding protein 2B-like
STRINGPavir.Cb01298.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-24DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]