 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.3NG140900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
ERF |
| Protein Properties |
Length: 195aa MW: 19658.2 Da PI: 8.7255 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG140900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 64.9 | 1.6e-20 | 55 | 104 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++aa+++++g+
Pavir.3NG140900.1.p 55 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDAAAREIRGA 104
9*******.**********954...4*************************985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MCGGAIIADF VPAGARRTAS SAAADSVSAS ILSGDGELMV EPAARAPAPG RKTAYRGIRR 60
RPWGRWAAEI RDPRKGARVW LGTYATPEDA ARAYDAAARE IRGAKAKLNF PPAVGAGAPA 120
AKRGRKVPPA AEESSGSSSS PAAAVVGPPG VGGADETLRD CMSGLEAFLG LEAAALEGGA 180
ADVQAWDAVD LMFA*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064397 | 3e-82 | BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds. |
| GenBank | BT087391 | 3e-82 | BT087391.1 Zea mays full-length cDNA clone ZM_BFb0059P19 mRNA, complete cds. |
| GenBank | EU951894 | 3e-82 | EU951894.1 Zea mays clone 1062095 ethylene responsive element binding protein 2 mRNA, complete cds. |
| GenBank | HQ858761 | 3e-82 | HQ858761.1 Zea mays clone UT1602 AP2-EREBP transcription factor mRNA, partial cds. |
| GenBank | JX469916 | 3e-82 | JX469916.1 Zea mays subsp. mays clone UT3172 MYB-related transcription factor mRNA, partial cds. |
