PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG121400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 415aa MW: 45429.3 Da PI: 9.2192 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.3e-17 | 73 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Pavir.3NG121400.2.p 73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 73 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-17 | 73 | 142 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.2E-25 | 74 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 74 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 74 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 122 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MASPNPDAAG LQSVAAAGAG EGSSSSFGAV AGAIVTAGEQ APRRALAVRK ERVCTAKERI 60 SRMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA 120 RAYDLAALKY WGAGTQINFP VSDYARDLEE MQMISKEDYL VSLRRKSSAF SRGLPKYRGL 180 PRQLHNSRWD TPLGHLLGND YLNLSCGKDI MLDGKFAGSF ALERKIDLTN YIRWWLPRKT 240 RQSDTSKAEE IADEVRAIES SMQQTEPYKL PSLGLCSPSK PSSAGLSACS ILSQSDAFKS 300 FMERSTKLSE ECTLSKEIVE GKAVASVPAT GHDTAAVNIN MNELLVQRAT YSMAPVMPTP 360 MKSTWSPADP PVDPLFWSNF VLPSSQPVTM ATITTTTTFA KNKVSSSDPF QSQE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3247 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG121400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040258 | 0.0 | BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds. | |||
GenBank | BT054058 | 0.0 | BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds. | |||
GenBank | BT055719 | 0.0 | BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds. | |||
GenBank | EU966890 | 0.0 | EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds. | |||
GenBank | KJ727592 | 0.0 | KJ727592.1 Zea mays clone pUT5452 AP2-EREBP transcription factor (EREB171) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808533.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-107 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2S3HCG6 | 0.0 | A0A2S3HCG6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EEC0 | 0.0 | A0A2T7EEC0_9POAL; Uncharacterized protein | ||||
STRING | Si021952m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-103 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG121400.2.p |