PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.3NG116800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 188aa MW: 20240.9 Da PI: 6.6624

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG116800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.7	8.4e-38	21	121	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCvlapyfpa+qp+++a vh +FG+sn +++l++lp +er +a+++++ eA++r++dPvyG++gvi +lqq+++ + Pavir.3NG116800.1.p 21 RCAACKYLRRRCAPDCVLAPYFPASQPRRYADVHAVFGTSNATRVLQSLPVQERGRAADTMAAEARWRVQDPVYGCTGVIDRLQQEIRAV 110 6*************************************************************************************** PP DUF260 91 kaelallkeel 101 ++ela+++++l Pavir.3NG116800.1.p 111 QHELARTRAQL 121 ****99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.716	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-37	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEVVDHQQGY GSGGGSSNPR RCAACKYLRR RCAPDCVLAP YFPASQPRRY ADVHAVFGTS 60 NATRVLQSLP VQERGRAADT MAAEARWRVQ DPVYGCTGVI DRLQQEIRAV QHELARTRAQ 120 LAAMAPPPGT QPIPPSLLLP PPPRQPLTAA AAAVEVVHAG AHGIAVQEED EAPFMDPDEF 180 LDLDGRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-33	22	121	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-33	22	121	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG116800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683529.1	5e-77	LOB domain-containing protein 24
Swissprot	P59467	2e-38	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	2e-38	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A3L6RJR8	6e-83	A0A3L6RJR8_PANMI; LOB domain-containing protein 24-like
STRING	Pavir.J04242.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-40	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Pavir.3NG116800.1.p