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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.3NG112500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
AP2 |
| Protein Properties |
Length: 425aa MW: 46554.7 Da PI: 8.8854 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.3NG112500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53 | 8.5e-17 | 73 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g
Pavir.3NG112500.1.p 73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132
57*******************766644468557*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MASPNPDAAG LQSVAAAGAG EGSSSSFGAV AGAIVTAGEQ APRRALAVRK ERVCTAKERI 60
SRMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA 120
RAYDLAALKY WGAGTQINFP VSDYARDLEE MQMISKEDYL VSLRRKSSAF SRGLPKYRGL 180
PRYVSAMEIL SMQLHNSRWD TPLGHLLGND YLNLSCGKDI MLDGKFAGSF ALERKIDLTN 240
YIRWWLPRKT RQSDTSKAEE IADEVRAIES SMQQTEPYKL PSLGLCSPSK PSSAGLSACS 300
ILSQSDAFKS FMERSTKLSE ECTLSKEIVE GKAVASVPAT GHDTAAANIN MNELLVQRAT 360
YSMAPVMPTP MKSTWSPADP PVDPLFWSNF VLPSSQPVTM ATITTTKTFA KNEVSSSDPF 420
QSQE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT040258 | 0.0 | BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds. |
| GenBank | BT054058 | 0.0 | BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds. |
| GenBank | BT055719 | 0.0 | BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds. |
| GenBank | BT055971 | 0.0 | BT055971.1 Zea mays full-length cDNA clone ZM_BFc0078N11 mRNA, complete cds. |
| GenBank | EU966890 | 0.0 | EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds. |
| GenBank | KJ727592 | 0.0 | KJ727592.1 Zea mays clone pUT5452 AP2-EREBP transcription factor (EREB171) mRNA, partial cds. |
